Report for Sequence Feature Glyma08g02920
Feature Type: gene_model
Chromosome: Gm08
Start: 2012262
stop: 2015968
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma08g02920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G23920 AT
Annotation by Michelle Graham. TAIR10: beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575
SoyBase E_val: 3.00E-149 ISS
GO:0000272 GO-bp
Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process
SoyBase N/A ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0005983 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch catabolic process
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016161 GO-mf
Annotation by Michelle Graham. GO Molecular Function: beta-amylase activity
SoyBase N/A ISS
GO:0043169 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cation binding
SoyBase N/A ISS
PF01373 PFAM
Glycosyl hydrolase family 14
JGI ISS
UniRef100_J7I5C5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Beta-amylase 3 n=1 Tax=Citrus trifoliata RepID=J7I5C5_PONTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233956B UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233956B related cluster n=1 Tax=unknown RepID=UPI000233956B
SoyBase E_val: 0 ISS
Expression Patterns of Glyma08g02920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma08g02920
Paralog Evidence Comments
Glyma05g36640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma08g02920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.08g025500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma08g02920
Coding sequences of Glyma08g02920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma08g02920.3 sequence type=CDS gene model=Glyma08g02920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCATCCTGTCCCAATCCACCGCCAGCTTCTCCTTCGTCTCCACTCGGACCGATTCCACTCACCTAACTCGCTTCCCCTGCCGCGTCACCTTCCGAGCCCGCTCTCCCCCTCTCCGCCCCGCCCTCGTCTCTTCGCGCCTCAACTCCTCCAGGTCCCCCGACGCCGGCGGCTCCCTCTCGCCGGACAACGGCGGCGGCGACGTCGCCTACCAGCTCCACCACGACTTCTCTCCGCAGCGCCGTCGCCGCGGCTCGCCGGTCTTCGTCACGCTGCCGGTGAATTCCATCGGTCGGGATGGCCGTGTCGCGAGGCCCAAGGCGATGATGTTCTCGCTTAAGGCGCTTGCCACGGCCGGCGTGGAAGGCGTGGTTATTGAAATTTGGTGGGGATTGGTTGAGAAGAAGAAACCTAGGGTTTACGATTGGAGAGGGTATGAGGAACTCGTCGCGATGGCGTGCAAGTGTGGCCTTAAGGTTCGGGCGGTTCTCGCCTTTCATCAGCATGGCACGGGACCTGATGATCCCAATTGGATGCCACTTCCTCTATGGGTGCTTGATGAGATACAGAAAGATACAGAGTTAGCGTATTGTGACAGGTTTGGACAAAGAAATATTGAATACATTTCCCTTGGATGTGATATTCTGCCTGTGTTATGTGGGCGTTCTCCTATTCAAGCATATGCAGATTTTATGAGGAATTTTAGGGACACTTTTGAGTCTTTGCTTGGCGTTGTCATCACAGGTGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTCACAGGAGCCAAATTTGGCTTGGTCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTGAATGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGTAGTGAAAGTTTGATGCAAAATCCTGAGCATACTGATTTTTTCAGAAATGACGGTGGCTCTTGGGACACACCATATGGTAAATTTTTTCTTGAATGGTACTCAGATATGCTGCTGCTGCATGGGGAGAGGATTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCATATATCAGCAAAATTGGCTGCCATTCACTGGCATTATGCCATGCAATCCCACCCATCAGAGTTAACAGCTGGCTATTATAATACTTCTAACAGGGACGGATACTTACCCATTGCTCGTATGTTTAGCAAGTATGGATTCTCAATGTGCTGCTCTTGTTTTGAAATGCAAGATGCTGTAACGCAGAAGATCAATCCAGATGGTAGTCCTGAAGGTTTTCTTAGACAGCTTTTGCTGGTTGCTAGGCTCTGTGATATATCACTCGAAGGTCAAAATTTTTCAACTAATTTGGATGATGGTGCATTCACCCAGGTGCTTAAGATGTCAAAATTTTACTCAGATGGGATTGAGAAGCGACCTTTCTCATTCAACTTTGTAAGAATGGACAAAAGATTGTTTGAATCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGACAATTGTCTAATGGAAACATTTTTCGAGCCAGATTAAATTCTGTTCGTGAAGTACGGTTGAAGACCACACCAGTGGTAGCAGCAGTGGGACTGTTGTACCACCTATATCAGCACTCTTGA
Predicted protein sequences of Glyma08g02920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma08g02920.3 sequence type=predicted peptide gene model=Glyma08g02920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAILSQSTASFSFVSTRTDSTHLTRFPCRVTFRARSPPLRPALVSSRLNSSRSPDAGGSLSPDNGGGDVAYQLHHDFSPQRRRRGSPVFVTLPVNSIGRDGRVARPKAMMFSLKALATAGVEGVVIEIWWGLVEKKKPRVYDWRGYEELVAMACKCGLKVRAVLAFHQHGTGPDDPNWMPLPLWVLDEIQKDTELAYCDRFGQRNIEYISLGCDILPVLCGRSPIQAYADFMRNFRDTFESLLGVVITGVQIGMGPGGELRYPSFSSQEPNLAWSHELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGSESLMQNPEHTDFFRNDGGSWDTPYGKFFLEWYSDMLLLHGERICREAETIFRGTEVHISAKLAAIHWHYAMQSHPSELTAGYYNTSNRDGYLPIARMFSKYGFSMCCSCFEMQDAVTQKINPDGSPEGFLRQLLLVARLCDISLEGQNFSTNLDDGAFTQVLKMSKFYSDGIEKRPFSFNFVRMDKRLFESRNWDRFTRFVRQLSNGNIFRARLNSVREVRLKTTPVVAAVGLLYHLYQHS*